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Articles- A Python analytical pipeline to identify prohormone precursors and predict prohormone cleavage sites
- PyMOOSE: Interoperable scripting in Python for MOOSE
- Brian: a simulator for spiking neural networks in Python
- Vision Egg: an open-source library for realtime visual stimulus generation
- The neuroterrain 3D mouse brain atlas
- BAMS neuroanatomical ontology: design and implementation
- Open source software development for neuroinformatics
- Where in the brain are the genes expressed?
- Large-scale modeling – a tool for conquering the complexity of the brain
- Shapley ratings in brain networks
Special Topics
Paper Pending- Modular toolkit for Data Processing (MDP): a Python data processing framework
- Generating stimuli for neuroscience using PsychoPy
- DataViewer3D: An open source, cross-platform multi-modal neuroimaging data visualization tool
- Neurons, robots and results: using Python for everything
- PCSIM: A Parallel Simulation Environment for Neural Circuits Fully Integrated with Python
- Network features and pathway analyses in a signal transduction cascade
- PyNEST: A convenient interface to the NEST simulator
- STEPS: Modeling and simulating complex reaction-diffusion systems with Python
- Python for large-scale electrophysiology
- PyNN: a common interface for neuronal network simulators
- NEURON and Python
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